The CTPase activity of ParB determines the size and dynamics of prokaryotic DNA partition complexes

1. Download : Download high-res image (186KB)
2. Download : Download full-size image

     

黑籽南瓜NBS类基因CfRFN2的克隆及VIGS验证

黑籽南瓜(Cucurbita ficifolia)是云南特有的具有高抗枯萎病遗传性状的瓜类种质资源。为鉴定黑籽南瓜中NBS-LRR类基因的抗病功能,该研究从其叶片中克隆了NBS类基因CfRFN2 (GenBank ID:MK618462),测序全长为4 303 bp,完整的编码框长度为4 092 bp,编码1 363个氨基酸残基,该基因注释为拟南芥抗病蛋白At4g27190类转录体X1的同源基因,含有1个NB-ARC和2个LRR结构域,属于具有信号肽的可溶性蛋白。核苷酸相似性分析显示,CfRFN2与其他瓜类NBS类基因相似性在87%～98%之间;系统进化树分析表明,CfRFN2蛋白和瓜类的其他NBS类抗病蛋白聚为一个分支,其中CfRFN2蛋白与中国南瓜和美洲南瓜的RPS2、印度南瓜的RPS2-like亲缘关系最近,其次是黄瓜的At4g27190和苦瓜的At4g27220,与甜瓜的Atg27190亲缘关系相对较远;组织表达特性分析表明,CfRFN2基因在黑籽南瓜叶片中表达量最高,其次是茎,而在果皮和根中表达量较低。该研究采用烟草脆裂病毒载体系统,构建了黑籽南瓜VIGS沉默载体pTRV2-CfRFN2,含沉默载体的农杆菌侵染黑籽南瓜幼苗后接种枯萎病菌,qRT-PCR检测表明,接种后2 d和4 d的转pTRV2-CfRFN2沉默组植株的CfRFN2基因表达量比接种后同时期的野生型植株显著降低(分别下降34.75%和98.27%),病情指数增加为野生型的1.32倍,初步证明黑籽南瓜CfRFN2基因具有抗枯萎病的功能,推测该基因可能在黑籽南瓜抗枯萎病防御过程中发挥着重要作用。该研究中NBS类基因CfRFN2的克隆和VIGS验证为黑籽南瓜更多优异基因的克隆和功能验证奠定了前期基础,也为发掘黑籽南瓜优异抗病基因和开展瓜类分子育种提供新信息。     

Structured elements drive extensive circular RNA translation

1. Download : Download high-res image (163KB)
2. Download : Download full-size image

     

Crystal Structures of Sodium-Bound Annexin A4

Annexin A4 (Anx4) possesses four repeat domains with one Ca²⁺-binding site (CBS) in each domain. In this study, we resolved two crystal structures of the Na⁺-bound form at high resolution (1.58 and 1.35 Å). This is the first report that Anx4 binds the Na⁺ ion in CBSs. Electron density maps, valence screening, and atomic absorbance spectrometry confirmed that Anx4 bound the Na⁺ ion. One structure (1.58 Å) bound the Na⁺ ion in CBS I, whereas another structure (1.35 Å) bound the Na⁺ ion in CBS II and CBS III. We compared the two Na⁺-bound forms by superimposing their C^α traces. The C^α atoms of CBS III largely moved by coordination of the Na⁺ ion. In the C^α atoms of CBS I, however, little change resulted from Na⁺-coordination. Only the side chain of Glu71 was moved by Na⁺-coordination in CBS I. These results indicate that Anx4 also binds not only Ca²⁺ but also Na⁺ ion in the CBS.     

Long-Term Modeling of Plutonium Solubility at a Desert Disposal Site,Including CO2 Diffusion,Cellulose Decay,and Chelation

The solubility of plutonium was estimated for waste buried at the Greater Confinement Disposal site in Nevada. The EQ3/6 thermochemical database was modified to include recent data on Pu complex formation, and the solubilities of two critical phases (probertite (CaNaB₅O₉·5H₂O), added as a backfill material; and Ca sac-charate) were determined by experiment. Reaction path runs were used to model effects of cellulose degradation, including complexation of actinides by organic acids and carbonate, decay of the complexing agents, and the buildup and diffusive loss of CO₂ through the permeable alluvium. For most waste interaction scenarios, long-term (≈10³ years) concentrations of Pu in pore waters are ≤10^?7 molal and are dominated by carbonate complexes, although organic complexes could dominate in the first ≈10³ years. In unusual circumstances, carbonation of buried lithium could produce very high Pu solubilities; however, even in such a system, a slight lowering of the effective redox potential dramatically lowers Pu solubility. A sensitivity analysis suggests that the “base case” calculations are conservative, tending to overestimate long-term solubility, with the system redox and the identity of the organic acids the major sources of uncertainty.     

Deregulation of ER-mitochondria contact formation and mitochondrial calcium homeostasis mediated by VDAC in fragile X syndrome

1. Download : Download high-res image (325KB)
2. Download : Download full-size image

     

Modeling of substrate and inhibitor binding to phospholipase A2.

Molecular graphics and molecular mechanics techniques have been used to study the mode of ligand binding and mechanism of action of the enzyme phospholipase A2. A substrate-enzyme complex was constructed based on the crystal structure of the apoenzyme. The complex was minimized to relieve initial strain, and the structural and energetic features of the resultant complex analyzed in detail, at the molecular and residue level. The minimized complex was then used as a basis for examining the action of the enzyme on modified substrates, binding of inhibitors to the enzyme, and possible reaction intermediate complexes. The model is compatible with the suggested mechanism of hydrolysis and with experimental data about stereoselectivity, efficiency of hydrolysis of modified substrates, and inhibitor potency. In conclusion, the model can be used as a tool in evaluating new ligands as possible substrates and in the rational design of inhibitors, for the therapeutic treatment of diseases such as rheumatoid arthritis, atherosclerosis, and asthma.     

How a mismatch repair enzyme balances the needs for efficient lesion processing and minimal action on undamaged DNA

Comment on: Maiti A, et al. Proc Natl Acad Sci USA 2012; 109:8091-6.     

Interaction of Subtilisin BPN′ and Recombinant Fungal Protease Inhibitor F from Silkworm with Substituted P1 Site Residues

Fungal protease inhibitor F (FPI-F) from silkworm inhibits subtilisin and fungal proteases. FPI-F mutants P₁ residues of which, Thr²⁹, were replaced with Glu, Phe, Gly, Leu, Met, and Arg, were prepared. The inhibitory activities of mutated FPI-F against subtilisin and other mammalian proteases indicated that FPI-F might be a specific inhibitor toward subtilisin-type protease.     

Twelve-Hour Night Shifts of Healthcare Workers: A Risk to the Patients?

We assessed the impact of 12h fixed night shift (19:00–07:00h) work, followed by 36h of off-time, on the sleep–wake cycle, sleep duration, self-perceived sleep quality, and work-time alertness on a group composed of 5 registered and 15 practical nurses. Wrist actigraphy (Ambulatory Monitoring, Inc.), with data analysis by the Cole-Kripke algorithm, was applied to determine sleep/wake episodes and their duration. The sleep episodes were divided into six categories: sleep during the night shift (x¯=208.6; SD±90.6mins), sleep after the night shift (x¯=138.7; SD±79.6min), sleep during the first night after the night work (x¯=318.5; SD±134.6min), sleep before the night work (x¯=104.3; SD±44.1min), diurnal sleep during the rest day (x¯=70.5; SD±43.0min), and nocturnal sleep during the rest day (x¯=310.4; SD±188.9mins). A significant difference (p<.0001; T-test for dependent samples) was detected between the perceived quality of sleep of the three diurnal sleep categories compared to the three nocturnal sleep categories. Even thought the nurses slept (napped) during the night shift, their self-perceived alertness systematically decreased during it. Statistically significant differences were documented by one-way ANOVA (F=40.534 p<.0001) among the alertness measurements done during the night shift. In particular, there was significant difference in the level of perceived alertness (p<.0001) between the 7^th and 10^thh of the 12h night shift. These findings of decreased alertness during the terminal hours of the night shift are of concern, since they suggest risk of comprised patient care.